• Banner Phasefocus Logo Large (2500X350).jpg

    Academic Publications

Home > Resources > Publications

Biological Applications

  1. "Root Extracts of Two Cultivars of Paeonia Species: Lipid Composition and Biological Effects on Different Cell Lines: Preliminary Results". Calonghi, N. et al., Molecules, (2021). doi: 10.3390/molecules26030655
  2. "Viscoelastically active sutures - A stitch in time?". France, L. A. & Fancey, K. S., Materials Science and Engineering: C, (2020). 
    doi: 10.1016/j.msec.2020.111695
  3. "Cytotoxic (cis,cis-1,3,5-triaminocyclohexane)ruthenium(II)-diphosphine complexes; evidence for covalent binding and intercalation with DNA". Wise, D.E. et al., Dalton Trans., (2020). doi: 10.1039/D0DT02612C
  4. "p53-dependent polyploidisation after DNA damage in G2 phase". Middleton, A. et al., bioRxiv 2020.06.09.141770, (2020). doi: 10.1101/2020.06.09.141770
  5. "MicroRNAs Restrain Proliferation in BRAFV600E Melanocytic Nevi". McNeal, A. S. et al., bioRxiv 2020.05.21.109397, (2020). doi: 10.1101/2020.05.21.109397
  6. "Estimation of Cell Cycle States of Human Melanoma Cells with Quantitative Phase Imaging and Deep Learning". Henser-Brownhill, T. et al., 2020 IEEE 17th Internation Symposium on Biomedical Imaging (ISBI), (2020). doi: 10.1109/ISBI45749.2020.9098458
  7. "Novel airway smooth muscle-mast cell interactions and a role for the TRPV4-ATP axis in non-atopic asthma". Bonvini, S. J. et al., European Respiratory Journal, (2020). doi: 10.1183/13993003.01458-2019
  8. "Nanoparticles carrying fingolimod and methotrexate enables targeted induction of apoptosis and immobilization of invasive thyroid cancer". Niemela, E. et al. ELSEVIER, (2020). doi: 10.1016/j.ejpb.2019.12.015
  9. "The clock gene Bmal1 inhibits macrophage motility, phagocytosis, and impairs defense against pneumonia". Kitchen, G. B. et al. PNAS, (2020). doi: 10.1073/pnas.1915932117
  10. "Melanoma mutations modify melanocyte dynamics in coculture with keratinocytes or fibroblasts". Škalamera, D., Stevenson, A. J., Ehmann, A., Ainger, S.A., Lanagan, C., Sturm, R.A., Gabrielli, B., Journal of Cell Science (2019). doi:10.1242/jcs.234716
  11. "Phospholipase D2 in prostate cancer: protein expression changes with Gleason score". Noble, A.R., Hogg, K., Suman, R. et al. Br J Cancer (2019) doi:10.1038/s41416-019-0610-7
  12. "Assessing the Advantages, Limitations and Potential of Human Primary Prostate Epithelial Cells as a Pre-Clinical Model for Prostate Cancer Research". Frame FM, Noble AR, O'Toole P, Marrison J, Godden T, O'Brien A, Maitland NJ. Advances in Experimental Medicine and Biology; Vol 1164, 109-118. (2019). doi: 10.1007/978-3-030-22254-3_9
  13. "Airway remodeling disease: primary human structural cells and phenotypic and pathway assays to identify targets with potential to prevent or reverse remodeling". Rosethorne EM, Charlton SJ. J Exp Pharmacol. 2018;10:75–85. (2018). doi:10.2147/JEP.S159124
  14. "Rho Kinase Inhibition by AT13148 Blocks Pancreatic Ductal Adenocarcinoma Invasion and Tumor Growth". Nicola Rath, June Munro, Marie Francene Cutiongco, Alicja Jagiello, Nikolaj Gadegaard, Lynn McGarry, Mathieu Unbekandt, Evdokia Michalopoulou, Jurre J. Kamphorst, David Sumpton, Gillian Mackay, Claire Vennin, Marina Pajic, Paul Timpson and Michael F. Olson. Cancer Res (2018) (78) (12) 3321-3336; DOI: 10.1158/0008-5472.CAN-17-1339
  15. “Tumor heterogeneity and therapy resistance - implications for future treatments of prostate cancer”,  Fiona M. Frame, Amanda R. Noble, Sandra Klein, Hannah F. Walker, Rakesh Suman, Richard Kasprowicz, Vin M. Mann, Matt S. Simms, Norman J. Maitland.   J Cancer Metastasis Treat (2017);3:302-14   http://jcmtjournal.com/article/view/2312
  16. "Characterising live cell behaviour: Traditional label-free and quantitative phase imaging approaches", Richard Kasprowicz, Rakesh Suman and Peter O’Toole. https://doi.org/10.1016/j.biocel.2017.01.004
  17. “Label free imaging to study phenotypic behavioural traits of cells in complex co-cultures,” Rakesh Suman, Gabrielle Smith, Katryn E.A. Hazel, Richard Kasprowicz, Mark Coles, Peter O’Toole, and Sangeeta Chawla. Rep. 6, 22032; doi: 10.1038/srep22032 (2016)
  18. “Ptychography – a label free, high-contrast imaging technique for live cells using quantitative phase information,” Joanne Marrison, Lotta Räty,  Poppy Marriott, and Peter O’Toole, Nature Scientific Reports 3, 2369 (2013) http://dx.doi.org/10.1038/srep02369
  19. “Quantitative phase contrast optimised cancerous cell differentiation via ptychography,” Daniel Claus, Andrew M. Maiden, Fucai Zhang, Francis G. R. Sweeney, Martin J. Humphry, Hermann Schluesener, and John M. Rodenburg , Optics Express 20, 9911-9918 (2012). http://dx.doi.org/10.1364/OE.20.009911
  20. “A Novel Method For Measuring Contraction Of Primary Human Airway Smooth Muscle Cells,” Eric Dubuis , Maria G. Belvisi, Sepideh Poushpas , Pauline Flajolet , Kevin Langley , and Mark A. Birrell,” American Thoracic Society International Conference Abstracts A28, (2015). http://www.atsjournals.org/doi/abs/10.1164/ajrccm-conference.2015.191.1_MeetingAbstracts.A1224
  21. “Aberrant Phenotype in Human Endothelial Cells of Diabetic Origin: Implications for Saphenous Vein Graft Failure?” Anna C. Roberts, Jai Gohil, Laura Hudson, Kyle Connolly, Philip Warburton , Rakesh Suman , Peter O’Toole, David J. O’Regan, Neil A. Turner , Kirsten Riches, and Karen E. Porter, Journal of Diabetes Research Volume 2015 (2015), Article ID 409432, http://dx.doi.org/10.1155/2015/409432
  22. “Ptychography: use of quantitative phase information for high-contrast label free time-lapse imaging of living cells,” Rakesh Suman, and Peter O'Toole, Proc. SPIE 8947, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XII, 89471Z (2014) http://dx.doi.org/10.1117/12.2037670
  23. “Ptychography: A powerful phase retrieval technique for biomedical imaging,” Daniel Claus, Hermann Schluesener, Andy Maiden, Fucai Zhang, Francis Sweeney, Martin Humphry, and John Rodenburg, SPIE 8947, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XII, 89471Z (2014)


  1. "Practical Implementation of High-Resolution Electron Ptychography and Comparison with Off-Axis Electron Holography", Blackburn A. M. and McLeod R. A., Microscopy, (2020). doi: 10.1093/jmicro/dfaa055
  2. “Phase calibration target for quantitative phase imaging and ptychography”, T. M. Godden, A. Muniz-Piniella, J. D. Claverley, A. Yacoot, and M. J Humphry. Optics Express 24, (2016).
  3. “Reciprocal-space up-sampling from real-space oversampling in x-ray ptychography,” D. J. Batey, T. B. Edo, C. Rau, U. Wagner, Z. D. Pešić, T. A. Waigh, and J.M.Rodenburg,   Rev. A 89, 043812 (2014).  http://dx.doi.org/10.1103/PhysRevA.89.043812
  4. “Ptychographic transmission microscopy in three dimensions using a multi-slice approach,” A. M. Maiden, M. Humphry, and J. Rodenburg, JOSA A 29, 1606-1614 (2012). http://dx.doi.org/10.1364/JOSAA.29.001606
  5. “Ptychographic microscope for three-dimensional imaging,” T. M. Godden, R. Suman, M. J. Humphry, J. M. Rodenburg, and A. M. Maiden, Optics Express 22, 12513-12523 (2014). http://dx.doi.org/10.1364/OE.22.012513
  6. “Superresolution imaging via ptychography,”A. M. Maiden, M. J. Humphry, F, Zhang, and J. M. Rodenburg, Opt. Soc. Am. A. 28, 604-612 (2011). http://dx.doi.org/10.1364/JOSAA.28.000604
  7. “A new method of high resolution, quantitative phase scanning microscopy,” A. M. Maiden, J. M. Rodenburg, and M. J. Humphry, Proc. of SPIE 7729, 77291I-77291I-8 (2010). http://dx.doi.org/10.1117/12.853339
  8. “Optical ptychography: A practical implementation with useful resolution,” A. M. Maiden, J. M. Rodenburg, and M. J. Humphry, Optics Letters 35, 2585-2587 (2010). http://dx.doi.org/10.1364/OL.35.002585
  9. “Influence of thick crystal effects on ptychographic image reconstruction with moveable illumination,” C. Liu, T. Walther, and J. M. Rodenburg, Ultramicroscopy 109, 1263-1275 (2009). http://dx.doi.org/10.1016/j.ultramic.2009.05.017
  10. “An improved ptychographical phase retrieval algorithm for diffractive imaging,” A. M. Maiden, and J. M. Rodenburg, Ultramicroscopy 109, 1256-1262 (2009). http://dx.doi.org/10.1016/j.ultramic.2009.05.012 
  11. “Information multiplexing in ptychography,” Darren J. Batey, Daniel Claus, and John M. Rodenburg, Ultramicroscopy 138, 13–21 (2014). http://dx.doi.org/10.1016/j.ultramic.2013.12.003
  12. “Separation of three-dimensional scattering effects in tilt-series Fourier ptychography,” Peng Li, Darren J. Batey, Tega B. Edo, and John M. Rodenburg, Ultramicroscopy 158, 1–7 (2015). http://dx.doi.org/10.1016/j.ultramic.2015.06.010
  13. “A phase retrieval algorithm for shifting illumination,” J. M. Rodenburg and H. M. L. Faulkner, Appl. Physics Lttrs 85, 4795-4797 (2004). http://dx.doi.org/10.1063/1.1823034
  14. “An annealing algorithm to correct positioning errors in ptychography,” A. M. Maiden, M. J. Humphry, M. C. Sarahan, B Kraus, and J. M. Rodenburg, Ultramicroscopy 120, 64-72 (2012). http://dx.doi.org/10.1016/j.ultramic.2012.06.001
  15. “Transmission Diffractive Microscopy Without Lenses at Visible, X-ray and Electron Wavelengths,” J. Rodenburg, A. Maiden, D. Batey, F. Sweeney, T. Edo, A. Hurst, F Hüe, P. Midgley, P. Wang, A. Kirkland, and M. Humphry, Microscopy and Microanalysis 17(S2), 1058 – 1059 (2011). http://dx.doi.org/10.1017/S1431927611006167
  16. “Ptychography: A novel phase retrieval technique, advantages and its application,” D. Claus, M. Maiden, F. Zhang, A. Hurst, T.  Edo, F. Sweeney, J. M. Rodenburg, H. Schluesener, and M. J. Humphry, Proceedings of SPIE 8001, The International Society for Optical Engineering 800109 (2011).  http://dx.doi.org/10.1117/12.893512